Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
- Gene history

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Gene: 1700052H01Rik ENSMUSG00000105297

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Description

RIKEN cDNA 1700052H01 gene [Source:MGI Symbol;Acc:MGI:1920712]

Gene Synonyms

Gm30852

Location

Chromosome 3: 41,308,499-41,362,716 forward strand.

GRCm39:CM000996.3

About this gene

This gene has 19 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000364668.1	1700052H01Rik-203	833	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000196973.3	1700052H01Rik-202	1154	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000364669.1	1700052H01Rik-204	784	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000364671.1	1700052H01Rik-206	769	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000196142.2	1700052H01Rik-201	717	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000364672.1	1700052H01Rik-207	681	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000364670.1	1700052H01Rik-205	625	No protein	-	lncRNA		-
ENSMUST00000364681.1	1700052H01Rik-216	624	No protein	-	lncRNA		-
ENSMUST00000364680.1	1700052H01Rik-215	623	No protein	-	lncRNA		-
ENSMUST00000364682.1	1700052H01Rik-217	566	No protein	-	lncRNA		-
ENSMUST00000364678.1	1700052H01Rik-213	501	No protein	-	lncRNA		-
ENSMUST00000364679.1	1700052H01Rik-214	484	No protein	-	lncRNA		-
ENSMUST00000364676.1	1700052H01Rik-211	469	No protein	-	lncRNA		-
ENSMUST00000364677.1	1700052H01Rik-212	419	No protein	-	lncRNA		-
ENSMUST00000364683.1	1700052H01Rik-218	387	No protein	-	lncRNA		-
ENSMUST00000364675.1	1700052H01Rik-210	385	No protein	-	lncRNA		-
ENSMUST00000364684.1	1700052H01Rik-219	294	No protein	-	lncRNA		-
ENSMUST00000364674.1	1700052H01Rik-209	287	No protein	-	lncRNA		-
ENSMUST00000364673.1	1700052H01Rik-208	284	No protein	-	lncRNA		-

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Summary

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