Summary
- Splice variants
- Transcript comparison
- Gene alleles
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- Secondary Structure
Comparative Genomics
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ID History
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Gene: 1700003C15Rik ENSMUSG00000099391

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Description

RIKEN cDNA 1700003C15 gene [Source:MGI Symbol;Acc:MGI:1916595]

Location

Chromosome 5: 11,739,205-11,819,672 reverse strand.

GRCm39:CM000998.3

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000377293.1	1700003C15Rik-203	1191	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000377298.1	1700003C15Rik-208	1442	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000377297.1	1700003C15Rik-207	1387	No protein	-	lncRNA		-
ENSMUST00000185360.4	1700003C15Rik-201	1295	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000377302.1	1700003C15Rik-212	1182	No protein	-	lncRNA		-
ENSMUST00000377296.1	1700003C15Rik-206	1147	No protein	-	lncRNA		-
ENSMUST00000377300.1	1700003C15Rik-210	1127	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000377294.1	1700003C15Rik-204	962	No protein	-	lncRNA		-
ENSMUST00000377299.1	1700003C15Rik-209	925	No protein	-	lncRNA		-
ENSMUST00000377307.1	1700003C15Rik-217	847	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000377305.1	1700003C15Rik-215	788	No protein	-	lncRNA		-
ENSMUST00000188236.3	1700003C15Rik-202	740	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000377306.1	1700003C15Rik-216	723	No protein	-	lncRNA		-
ENSMUST00000377303.1	1700003C15Rik-213	714	No protein	-	lncRNA		-
ENSMUST00000377308.1	1700003C15Rik-218	657	No protein	-	lncRNA		-
ENSMUST00000377304.1	1700003C15Rik-214	602	No protein	-	lncRNA		-
ENSMUST00000377301.1	1700003C15Rik-211	593	No protein	-	lncRNA		-
ENSMUST00000377295.1	1700003C15Rik-205	454	No protein	-	lncRNA		-

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Summary

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