Summary
- Splice variants
- Transcript comparison
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Gene: Gm40841 ENSMUSG00000113216

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Description

predicted gene, 40841 [Source:MGI Symbol;Acc:MGI:5623726]

Location

Chromosome 13: 28,578,436-28,604,356 reverse strand.

GRCm39:CM001006.3

About this gene

This gene has 15 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000222823.2	Gm40841-202	3989	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000241374.2	Gm40841-204	4580	No protein	-	lncRNA		-
ENSMUST00000366416.1	Gm40841-212	3276	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000243555.2	Gm40841-205	3109	No protein	-	lncRNA		-
ENSMUST00000223198.3	Gm40841-203	2778	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000366415.1	Gm40841-211	2336	No protein	-	lncRNA		-
ENSMUST00000366412.1	Gm40841-208	2029	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000366413.1	Gm40841-209	1852	No protein	-	lncRNA		-
ENSMUST00000366411.1	Gm40841-207	1647	No protein	-	lncRNA		-
ENSMUST00000366417.1	Gm40841-213	1567	No protein	-	lncRNA		-
ENSMUST00000366418.1	Gm40841-214	1467	No protein	-	lncRNA		-
ENSMUST00000366419.1	Gm40841-215	1433	No protein	-	lncRNA		-
ENSMUST00000243917.2	Gm40841-206	1407	No protein	-	lncRNA		-
ENSMUST00000221933.3	Gm40841-201	1281	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000366414.1	Gm40841-210	845	No protein	-	lncRNA		-

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Summary

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