Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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Gene: 1700027J07Rik ENSMUSG00000111422

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Description

RIKEN cDNA 1700027J07 gene [Source:MGI Symbol;Acc:MGI:1916693]

Location

Chromosome 10: 43,618,796-43,708,903 forward strand.

GRCm39:CM001003.3

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000286454.1	1700027J07Rik-204	867	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000286459.1	1700027J07Rik-209	2160	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000217501.2	1700027J07Rik-203	1884	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000286458.1	1700027J07Rik-208	1781	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000286456.1	1700027J07Rik-206	1524	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000213330.3	1700027J07Rik-201	1523	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000286457.1	1700027J07Rik-207	1295	No protein	-	lncRNA		-
ENSMUST00000286466.1	1700027J07Rik-216	1159	No protein	-	lncRNA		-
ENSMUST00000286463.1	1700027J07Rik-213	1143	No protein	-	lncRNA		-
ENSMUST00000215747.3	1700027J07Rik-202	1089	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000286464.1	1700027J07Rik-214	953	No protein	-	lncRNA		-
ENSMUST00000286465.1	1700027J07Rik-215	719	No protein	-	lncRNA		-
ENSMUST00000286467.1	1700027J07Rik-217	614	No protein	-	lncRNA		-
ENSMUST00000286462.1	1700027J07Rik-212	577	No protein	-	lncRNA		-
ENSMUST00000286460.1	1700027J07Rik-210	548	No protein	-	lncRNA		-
ENSMUST00000286455.1	1700027J07Rik-205	546	No protein	-	lncRNA		-
ENSMUST00000286461.1	1700027J07Rik-211	523	No protein	-	lncRNA		-

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Summary

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