Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
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Gene: Gm43646 ENSMUSG00000106550

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Description

predicted gene 43646 [Source:MGI Symbol;Acc:MGI:5663783]

Location

Chromosome 3: 142,587,336-142,604,317 forward strand.

GRCm39:CM000996.3

About this gene

This gene has 12 transcripts (splice variants) and 3 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000199962.3	Gm43646-202	477	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000181882.4	Gm43646-201	1686	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000298358.1	Gm43646-206	1575	No protein	-	lncRNA		-
ENSMUST00000298355.1	Gm43646-203	1540	No protein	-	lncRNA		-
ENSMUST00000298357.1	Gm43646-205	1484	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000298504.1	Gm43646-211	1239	No protein	-	lncRNA		-
ENSMUST00000298356.1	Gm43646-204	1211	No protein	-	lncRNA		-
ENSMUST00000298359.1	Gm43646-207	973	No protein	-	lncRNA		-
ENSMUST00000298361.1	Gm43646-209	950	No protein	-	lncRNA		-
ENSMUST00000298360.1	Gm43646-208	751	No protein	-	lncRNA		-
ENSMUST00000298505.1	Gm43646-212	558	No protein	-	lncRNA		-
ENSMUST00000298362.1	Gm43646-210	523	No protein	-	lncRNA		-

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Summary

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