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- Transcript comparison
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Gene: Gm42891 ENSMUSG00000106342

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Description

predicted gene 42891 [Source:MGI Symbol;Acc:MGI:5663028]

Location

Chromosome 3: 117,028,198-117,066,635 forward strand.

GRCm39:CM000996.3

About this gene

This gene has 12 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000272931.1	Gm42891-202	557	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000272937.1	Gm42891-208	1298	No protein	-	lncRNA		-
ENSMUST00000272933.1	Gm42891-204	907	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000272935.1	Gm42891-206	904	No protein	-	lncRNA		-
ENSMUST00000272938.1	Gm42891-209	895	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000272936.1	Gm42891-207	841	No protein	-	lncRNA		-
ENSMUST00000272940.1	Gm42891-211	769	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000272934.1	Gm42891-205	683	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000272932.1	Gm42891-203	648	No protein	-	lncRNA		-
ENSMUST00000272939.1	Gm42891-210	647	No protein	-	lncRNA		-
ENSMUST00000272941.1	Gm42891-212	399	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000199340.2	Gm42891-201	281	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

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Summary

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