Summary
- Splice variants
- Transcript comparison
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Gene: 4933400F21Rik ENSMUSG00000102009

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Description

RIKEN cDNA 4933400F21 gene [Source:MGI Symbol;Acc:MGI:1921653]

Location

Chromosome 1: 89,578,251-89,611,630 reverse strand.

GRCm39:CM000994.3

About this gene

This gene has 12 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000187011.3	4933400F21Rik-202	397	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000186098.7	4933400F21Rik-201	1007	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000187295.3	4933400F21Rik-203	2640	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000340134.1	4933400F21Rik-206	1203	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000340133.1	4933400F21Rik-205	1070	No protein	-	lncRNA		-
ENSMUST00000340137.1	4933400F21Rik-209	1069	No protein	-	lncRNA		-
ENSMUST00000340138.1	4933400F21Rik-210	1068	No protein	-	lncRNA		-
ENSMUST00000340135.1	4933400F21Rik-207	997	No protein	-	lncRNA		-
ENSMUST00000340136.1	4933400F21Rik-208	948	No protein	-	lncRNA		-
ENSMUST00000340139.1	4933400F21Rik-211	928	No protein	-	lncRNA		-
ENSMUST00000340140.1	4933400F21Rik-212	892	No protein	-	lncRNA		-
ENSMUST00000340132.1	4933400F21Rik-204	745	No protein	-	lncRNA		-

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Summary

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