Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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Gene: 1700129L04Rik ENSMUSG00000100603

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Description

RIKEN cDNA 1700129L04 gene [Source:MGI Symbol;Acc:MGI:1920877]

Location

Chromosome 15: 94,995,423-95,084,331 reverse strand.

GRCm39:CM001008.3

About this gene

This gene has 17 transcripts (splice variants) and 3 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000189291.8	1700129L04Rik-202	1407	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000255794.1	1700129L04Rik-213	1748	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000255795.1	1700129L04Rik-214	1686	No protein	-	lncRNA		-
ENSMUST00000255798.1	1700129L04Rik-217	1664	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000255796.1	1700129L04Rik-215	1630	No protein	-	lncRNA		-
ENSMUST00000255797.1	1700129L04Rik-216	1440	No protein	-	lncRNA		-
ENSMUST00000255792.1	1700129L04Rik-211	1274	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000255793.1	1700129L04Rik-212	1239	No protein	-	lncRNA		-
ENSMUST00000255790.1	1700129L04Rik-210	1215	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000185302.3	1700129L04Rik-201	1124	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000255786.1	1700129L04Rik-208	881	No protein	-	lncRNA		-
ENSMUST00000255777.1	1700129L04Rik-203	878	No protein	-	lncRNA		-
ENSMUST00000255787.1	1700129L04Rik-209	805	No protein	-	lncRNA		-
ENSMUST00000255780.1	1700129L04Rik-205	684	No protein	-	lncRNA		-
ENSMUST00000255782.1	1700129L04Rik-207	582	No protein	-	lncRNA		-
ENSMUST00000255781.1	1700129L04Rik-206	572	No protein	-	lncRNA		-
ENSMUST00000255779.1	1700129L04Rik-204	371	No protein	-	lncRNA		-

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Summary

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