Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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  - Gene tree
  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
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ID History
- Gene history

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Gene: Gm16538 ENSMUSG00000089766

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Description

predicted gene 16538 [Source:MGI Symbol;Acc:MGI:4414958]

Location

Chromosome 19: 5,766,215-5,782,483 forward strand.

GRCm39:CM001012.3

About this gene

This gene has 10 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000301301.1	Gm16538-202	1013	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000162407.3	Gm16538-201	1328	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000301306.1	Gm16538-207	1250	No protein	-	lncRNA		-
ENSMUST00000301309.1	Gm16538-210	1167	No protein	-	lncRNA		-
ENSMUST00000301307.1	Gm16538-208	1111	No protein	-	lncRNA		-
ENSMUST00000301303.1	Gm16538-204	1000	No protein	-	lncRNA		-
ENSMUST00000301305.1	Gm16538-206	959	No protein	-	lncRNA		-
ENSMUST00000301308.1	Gm16538-209	922	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000301302.1	Gm16538-203	906	No protein	-	lncRNA		-
ENSMUST00000301304.1	Gm16538-205	858	No protein	-	lncRNA		-

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Summary

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