Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Orthologues
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- GO: Anatomical entity
Phenotypes
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Molecular interactions
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ID History
- Gene history

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Gene: AA387200 ENSMUSG00000085946

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Description

expressed sequence AA387200 [Source:MGI Symbol;Acc:MGI:3034170]

Location

Chromosome 2: 151,877,075-151,923,579 reverse strand.

GRCm39:CM000995.3

About this gene

This gene has 11 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000313690.1	AA387200-211	485	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000313684.1	AA387200-205	1576	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000147463.3	AA387200-201	1486	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000313689.1	AA387200-210	1450	No protein	-	lncRNA		-
ENSMUST00000313683.1	AA387200-204	1436	No protein	-	lncRNA		-
ENSMUST00000313686.1	AA387200-207	1406	No protein	-	lncRNA		-
ENSMUST00000313685.1	AA387200-206	1356	No protein	-	lncRNA		-
ENSMUST00000313687.1	AA387200-208	1237	No protein	-	lncRNA		-
ENSMUST00000313688.1	AA387200-209	1222	No protein	-	lncRNA		-
ENSMUST00000313681.1	AA387200-202	700	No protein	-	lncRNA		-
ENSMUST00000313682.1	AA387200-203	262	No protein	-	lncRNA		-

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Summary

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