Gene: Atg4a ENSMUSG00000079418

Description

autophagy related 4A, cysteine peptidase [Source:MGI Symbol;Acc:MGI:2147903]

Gene Synonyms

Apg4a, Autl2, autophagin 2

Location

Chromosome X: 139,857,656-139,947,266 forward strand.

GRCm39:CM001013.3

About this gene

This gene has 7 transcripts (splice variants), 157 orthologues, 4 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000112971.2	Atg4a-201	2202	396aa	ENSMUSP00000108595.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS85810	Q5EBK1 Q8C9S8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000239541.1	Atg4a-204	2091	372aa	ENSMUSP00000159430.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A7N9VS64	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000239544.1	Atg4a-207	1857	213aa	ENSMUSP00000159432.2	Nonsense mediated decay		A0A7N9VT17	-
ENSMUST00000153742.3	Atg4a-203	752	88aa	ENSMUSP00000159431.2	Nonsense mediated decay		A0A7P0A158	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000239542.1	Atg4a-205	799	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000239543.1	Atg4a-206	429	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000147972.2	Atg4a-202	696	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Gene: Atg4a ENSMUSG00000079418

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Gene: Atg4a ENSMUSG00000079418

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