Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Orthologues
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Gene: 2010007H06Rik ENSMUSG00000044694

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Description

RIKEN cDNA 2010007H06 gene [Source:MGI Symbol;Acc:MGI:1917099]

Location

Chromosome 9: 51,185,018-51,195,510 forward strand.

GRCm39:CM001002.3

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000312597.1	2010007H06Rik-203	824	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000186025.3	2010007H06Rik-202	4952	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000312604.1	2010007H06Rik-210	985	No protein	-	lncRNA		-
ENSMUST00000312605.1	2010007H06Rik-211	909	No protein	-	lncRNA		-
ENSMUST00000312610.1	2010007H06Rik-216	879	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000312599.1	2010007H06Rik-205	848	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000312601.1	2010007H06Rik-207	848	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000312602.1	2010007H06Rik-208	790	No protein	-	lncRNA		-
ENSMUST00000312611.1	2010007H06Rik-217	776	No protein	-	lncRNA		-
ENSMUST00000312600.1	2010007H06Rik-206	689	No protein	-	lncRNA		-
ENSMUST00000312607.1	2010007H06Rik-213	633	No protein	-	lncRNA		-
ENSMUST00000050829.2	2010007H06Rik-201	626	No protein	-	lncRNA		TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000312609.1	2010007H06Rik-215	609	No protein	-	lncRNA		-
ENSMUST00000312598.1	2010007H06Rik-204	597	No protein	-	lncRNA		-
ENSMUST00000312606.1	2010007H06Rik-212	569	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000312603.1	2010007H06Rik-209	469	No protein	-	lncRNA		-
ENSMUST00000312608.1	2010007H06Rik-214	420	No protein	-	lncRNA		-
ENSMUST00000312612.1	2010007H06Rik-218	361	No protein	-	lncRNA		-

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Summary

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