Gene: Rad9a ENSMUSG00000024824

Description

RAD9 checkpoint clamp component A [Source:MGI Symbol;Acc:MGI:1328356]

Gene Synonyms

Rad9

Location

Chromosome 19: 4,245,195-4,251,661 reverse strand.

GRCm39:CM001012.3

About this gene

This gene has 8 transcripts (splice variants), 187 orthologues, 1 paralogue and is associated with 47 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025740.8	Rad9a-201	2081	389aa	ENSMUSP00000025740.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29422	Q9Z0F6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237923.2	Rad9a-207	544	144aa	ENSMUSP00000158283.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAY5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000237723.2	Rad9a-206	475	80aa	ENSMUSP00000157774.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9R8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000237278.2	Rad9a-204	730	73aa	ENSMUSP00000158136.2	Nonsense mediated decay		A0A494BAL0	-
ENSMUST00000237467.2	Rad9a-205	2101	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000235742.2	Rad9a-203	710	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000235367.2	Rad9a-202	644	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237963.2	Rad9a-208	399	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Gene: Rad9a ENSMUSG00000024824

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Gene: Rad9a ENSMUSG00000024824

Summary

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