Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Phenotypes
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- Gene history

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Gene: Gm39204 ENSMUSG00000109583

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Description

predicted gene, 39204 [Source:MGI Symbol;Acc:MGI:5622089]

Gene Synonyms

Gm45325

Location

Chromosome 8: 79,680,555-79,740,748 forward strand.

GRCm39:CM001001.3

About this gene

This gene has 14 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000210045.2	Gm39204-201	1307	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000289780.1	Gm39204-206	1217	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000289778.1	Gm39204-204	1101	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000289783.1	Gm39204-209	1085	No protein	-	lncRNA		-
ENSMUST00000289782.1	Gm39204-208	1061	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000289777.1	Gm39204-203	1060	No protein	-	lncRNA		-
ENSMUST00000289781.1	Gm39204-207	928	No protein	-	lncRNA		-
ENSMUST00000289776.1	Gm39204-202	879	No protein	-	lncRNA		-
ENSMUST00000289779.1	Gm39204-205	811	No protein	-	lncRNA		-
ENSMUST00000289784.1	Gm39204-210	533	No protein	-	lncRNA		-
ENSMUST00000289787.1	Gm39204-213	441	No protein	-	lncRNA		-
ENSMUST00000289788.1	Gm39204-214	426	No protein	-	lncRNA		-
ENSMUST00000289786.1	Gm39204-212	342	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000289785.1	Gm39204-211	300	No protein	-	lncRNA		-

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Gene tree

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