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Gene: Gm42500 ENSMUSG00000104727

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Description

predicted gene 42500 [Source:MGI Symbol;Acc:MGI:5662637]

Location

Chromosome 5: 128,520,493-128,527,730 forward strand.

GRCm39:CM000998.3

About this gene

This gene has 10 transcripts (splice variants) and 3 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000199898.3	Gm42500-201	2287	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000282130.1	Gm42500-208	2239	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000282126.1	Gm42500-204	1614	No protein	-	lncRNA		-
ENSMUST00000282127.1	Gm42500-205	1514	No protein	-	lncRNA		-
ENSMUST00000282125.1	Gm42500-203	1413	No protein	-	lncRNA		-
ENSMUST00000282131.1	Gm42500-209	923	No protein	-	lncRNA		-
ENSMUST00000282128.1	Gm42500-206	882	No protein	-	lncRNA		-
ENSMUST00000282129.1	Gm42500-207	652	No protein	-	lncRNA		-
ENSMUST00000282132.1	Gm42500-210	508	No protein	-	lncRNA		-
ENSMUST00000200324.2	Gm42500-202	405	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

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Gene tree

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