Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Gm5624 ENSMUSG00000092165

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Description

predicted gene 5624 [Source:MGI Symbol;Acc:MGI:3646247]

Location

Chromosome 14: 44,794,587-44,865,395 reverse strand.

GRCm39:CM001007.3

About this gene

This gene has 4 transcripts (splice variants), 44 orthologues and 154 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000227882.3	Gm5624-202	1500	162aa	ENSMUSP00000154449.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BR58	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000228629.2	Gm5624-203	1734	43aa	ENSMUSP00000153804.2	Nonsense mediated decay		A0A2I3BPI7	-
ENSMUST00000249477.1	Gm5624-204	1539	69aa	ENSMUSP00000159772.1	Nonsense mediated decay		A0AA74KSZ7	-
ENSMUST00000226458.2	Gm5624-201	671	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

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Gene tree

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