Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
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Gene: 9530056K15Rik ENSMUSG00000045345

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Description

RIKEN cDNA 9530056K15 gene [Source:MGI Symbol;Acc:MGI:2444456]

Location

Chromosome 5: 143,376,483-143,389,514 reverse strand.

GRCm39:CM000998.3

About this gene

This gene has 8 transcripts (splice variants) and 3 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000176473.3	9530056K15Rik-201	1297	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000197918.3	9530056K15Rik-202	2631	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000310428.1	9530056K15Rik-204	912	No protein	-	lncRNA		-
ENSMUST00000310429.1	9530056K15Rik-205	669	No protein	-	lncRNA		-
ENSMUST00000310427.1	9530056K15Rik-203	628	No protein	-	lncRNA		-
ENSMUST00000310430.1	9530056K15Rik-206	582	No protein	-	lncRNA		-
ENSMUST00000310431.1	9530056K15Rik-207	370	No protein	-	lncRNA		-
ENSMUST00000310432.1	9530056K15Rik-208	320	No protein	-	lncRNA		-

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Gene tree

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