Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
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Molecular interactions
External references
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ID History
- Gene history

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Gene: 9230112J17Rik ENSMUSG00000111761

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Description

RIKEN cDNA 9230112J17 gene [Source:MGI Symbol;Acc:MGI:1924999]

Location

Chromosome 9: 60,431,250-60,469,770 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 11 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000216749.3	9230112J17Rik-201	2361	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000363900.1	9230112J17Rik-205	2286	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000217430.4	9230112J17Rik-202	1534	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000243654.2	9230112J17Rik-204	1270	No protein	-	lncRNA		-
ENSMUST00000363901.1	9230112J17Rik-206	1206	No protein	-	lncRNA		-
ENSMUST00000363902.1	9230112J17Rik-207	1050	No protein	-	lncRNA		-
ENSMUST00000363906.1	9230112J17Rik-211	855	No protein	-	lncRNA		-
ENSMUST00000363903.1	9230112J17Rik-208	792	No protein	-	lncRNA		-
ENSMUST00000242602.2	9230112J17Rik-203	671	No protein	-	lncRNA		-
ENSMUST00000363904.1	9230112J17Rik-209	531	No protein	-	lncRNA		-
ENSMUST00000363905.1	9230112J17Rik-210	331	No protein	-	lncRNA		-

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Orthologues

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