Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
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ID History
- Gene history

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Gene: ENSMUSG00000125838

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Description

novel transcript

Location

Chromosome 18: 55,221,180-55,264,356 reverse strand.

GRCm39:CM001011.3

About this gene

This gene has 13 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000272553.1	-	586	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000272565.1	-	1300	No protein	-	lncRNA		-
ENSMUST00000272562.1	-	1257	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000272555.1	-	1229	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000272557.1	-	1139	No protein	-	lncRNA		-
ENSMUST00000272556.1	-	865	No protein	-	lncRNA		-
ENSMUST00000272558.1	-	835	No protein	-	lncRNA		-
ENSMUST00000272563.1	-	660	No protein	-	lncRNA		-
ENSMUST00000272564.1	-	632	No protein	-	lncRNA		-
ENSMUST00000272559.1	-	594	No protein	-	lncRNA		-
ENSMUST00000272560.1	-	535	No protein	-	lncRNA		-
ENSMUST00000272561.1	-	368	No protein	-	lncRNA		-
ENSMUST00000272554.1	-	364	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data