Gene: Vmn1r229 ENSMUSG00000117148

Description

vomeronasal 1 receptor 229 [Source:MGI Symbol;Acc:MGI:2159615]

Gene Synonyms

V1re1

Location

Chromosome 17: 21,031,817-21,043,889 forward strand.

GRCm39:CM001010.3

About this gene

This gene has 5 transcripts (splice variants), 100 orthologues and 237 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000233712.2	Vmn1r229-205	9510	306aa	ENSMUSP00000156596.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28428	Q8R2A9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000232810.2	Vmn1r229-202	9467	306aa	ENSMUSP00000156686.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28428	Q8R2A9	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000232852.2	Vmn1r229-203	9451	306aa	ENSMUSP00000156964.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28428	Q8R2A9	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000076759.3	Vmn1r229-201	921	306aa	ENSMUSP00000076045.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28428	Q8R2A9	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000233490.2	Vmn1r229-204	12010	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Vmn1r229 ENSMUSG00000117148

Strains

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Gene: Vmn1r229 ENSMUSG00000117148

Strains

About Us

Get help

Our sister sites

Follow us