Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
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ID History
- Gene history

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Gene: Gm49518 ENSMUSG00000116290

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Description

predicted gene, 49518 [Source:MGI Symbol;Acc:MGI:6155211]

Location

Chromosome 16: 23,807,658-23,883,981 forward strand.

GRCm39:CM001009.3

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000348849.1	Gm49518-202	1865	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000230357.2	Gm49518-201	1771	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000348864.1	Gm49518-217	1225	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000348865.1	Gm49518-218	1046	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000348853.1	Gm49518-206	855	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000348863.1	Gm49518-216	638	No protein	-	lncRNA		-
ENSMUST00000348856.1	Gm49518-209	520	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000348858.1	Gm49518-211	488	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000348854.1	Gm49518-207	469	No protein	-	lncRNA		-
ENSMUST00000348855.1	Gm49518-208	449	No protein	-	lncRNA		-
ENSMUST00000348852.1	Gm49518-205	440	No protein	-	lncRNA		-
ENSMUST00000348850.1	Gm49518-203	431	No protein	-	lncRNA		-
ENSMUST00000348862.1	Gm49518-215	415	No protein	-	lncRNA		-
ENSMUST00000348857.1	Gm49518-210	413	No protein	-	lncRNA		-
ENSMUST00000348859.1	Gm49518-212	382	No protein	-	lncRNA		-
ENSMUST00000348860.1	Gm49518-213	362	No protein	-	lncRNA		-
ENSMUST00000348851.1	Gm49518-204	357	No protein	-	lncRNA		-
ENSMUST00000348861.1	Gm49518-214	352	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data