Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: 1700087M22Rik ENSMUSG00000115723

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Description

RIKEN cDNA 1700087M22 gene [Source:MGI Symbol;Acc:MGI:1925717]

Location

Chromosome 14: 30,454,327-30,500,003 reverse strand.

GRCm39:CM001007.3

About this gene

This gene has 13 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000227408.3	1700087M22Rik-201	482	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000278530.1	1700087M22Rik-203	1091	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000278538.1	1700087M22Rik-211	651	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000278533.1	1700087M22Rik-206	556	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000278532.1	1700087M22Rik-205	502	No protein	-	lncRNA		-
ENSMUST00000278539.1	1700087M22Rik-212	498	No protein	-	lncRNA		-
ENSMUST00000278535.1	1700087M22Rik-208	484	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000278534.1	1700087M22Rik-207	420	No protein	-	lncRNA		-
ENSMUST00000278540.1	1700087M22Rik-213	406	No protein	-	lncRNA		-
ENSMUST00000278537.1	1700087M22Rik-210	394	No protein	-	lncRNA		-
ENSMUST00000278529.1	1700087M22Rik-202	393	No protein	-	lncRNA		-
ENSMUST00000278536.1	1700087M22Rik-209	356	No protein	-	lncRNA		-
ENSMUST00000278531.1	1700087M22Rik-204	294	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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