Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Pathway
Molecular interactions
Regulation
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ID History
- Gene history

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Gene: Gm48664 ENSMUSG00000114001

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Description

predicted gene, 48664 [Source:MGI Symbol;Acc:MGI:6098280]

Location

Chromosome 12: 88,598,126-88,711,396 forward strand.

GRCm39:CM001005.3

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000338293.1	Gm48664-203	432	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000338297.1	Gm48664-207	1094	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000338296.1	Gm48664-206	1038	No protein	-	lncRNA		-
ENSMUST00000338299.1	Gm48664-209	984	No protein	-	lncRNA		-
ENSMUST00000338294.1	Gm48664-204	959	No protein	-	lncRNA		-
ENSMUST00000338298.1	Gm48664-208	849	No protein	-	lncRNA		-
ENSMUST00000338295.1	Gm48664-205	839	No protein	-	lncRNA		-
ENSMUST00000338301.1	Gm48664-211	813	No protein	-	lncRNA		-
ENSMUST00000338302.1	Gm48664-212	755	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000338300.1	Gm48664-210	745	No protein	-	lncRNA		-
ENSMUST00000338303.1	Gm48664-213	642	No protein	-	lncRNA		-
ENSMUST00000222440.3	Gm48664-202	636	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000338304.1	Gm48664-214	569	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000220698.2	Gm48664-201	568	No protein	-	lncRNA		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000338305.1	Gm48664-215	546	No protein	-	lncRNA		-
ENSMUST00000338306.1	Gm48664-216	321	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data