Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: D230030E09Rik ENSMUSG00000113875

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Description

Riken cDNA D230030E09 gene [Source:MGI Symbol;Acc:MGI:4438394]

Gene Synonyms

Npe

Location

Chromosome 12: 118,479,410-118,548,489 reverse strand.

GRCm39:CM001005.3

About this gene

This gene has 12 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000352738.1	D230030E09Rik-202	846	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000352744.1	D230030E09Rik-208	1890	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000352741.1	D230030E09Rik-205	1147	No protein	-	lncRNA		-
ENSMUST00000352746.1	D230030E09Rik-210	1030	No protein	-	lncRNA		-
ENSMUST00000222459.2	D230030E09Rik-201	884	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000352740.1	D230030E09Rik-204	806	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000352743.1	D230030E09Rik-207	746	No protein	-	lncRNA		-
ENSMUST00000352748.1	D230030E09Rik-212	737	No protein	-	lncRNA		-
ENSMUST00000352739.1	D230030E09Rik-203	708	No protein	-	lncRNA		-
ENSMUST00000352742.1	D230030E09Rik-206	633	No protein	-	lncRNA		-
ENSMUST00000352745.1	D230030E09Rik-209	556	No protein	-	lncRNA		-
ENSMUST00000352747.1	D230030E09Rik-211	532	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data