Summary
- Splice variants
- Transcript comparison
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Comparative Genomics
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Gene: 5033406O09Rik ENSMUSG00000113769

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Description

RIKEN cDNA 5033406O09 gene [Source:MGI Symbol;Acc:MGI:1923205]

Location

Chromosome 12: 111,908,398-111,913,497 reverse strand.

GRCm39:CM001005.3

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000281290.1	5033406O09Rik-205	1264	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000223453.3	5033406O09Rik-204	1849	No protein	-	lncRNA		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000221669.3	5033406O09Rik-202	1774	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000281294.1	5033406O09Rik-209	1755	No protein	-	lncRNA		-
ENSMUST00000281297.1	5033406O09Rik-212	1722	No protein	-	lncRNA		-
ENSMUST00000221314.3	5033406O09Rik-201	1704	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000281298.1	5033406O09Rik-213	1699	No protein	-	lncRNA		-
ENSMUST00000281296.1	5033406O09Rik-211	1662	No protein	-	lncRNA		-
ENSMUST00000222845.3	5033406O09Rik-203	1652	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000281295.1	5033406O09Rik-210	1550	No protein	-	lncRNA		-
ENSMUST00000281299.1	5033406O09Rik-214	1269	No protein	-	lncRNA		-
ENSMUST00000281292.1	5033406O09Rik-207	881	No protein	-	lncRNA		-
ENSMUST00000281293.1	5033406O09Rik-208	752	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281291.1	5033406O09Rik-206	667	No protein	-	lncRNA		-
ENSMUST00000281300.1	5033406O09Rik-215	565	No protein	-	lncRNA		-
ENSMUST00000281302.1	5033406O09Rik-217	462	No protein	-	lncRNA		-
ENSMUST00000281301.1	5033406O09Rik-216	446	No protein	-	lncRNA		-
ENSMUST00000281303.1	5033406O09Rik-218	426	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data