Summary
- Splice variants
- Transcript comparison
- Gene alleles
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- Secondary Structure
Comparative Genomics
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Ontologies
- GO: Anatomical entity
Phenotypes
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Gene: BB123696 ENSMUSG00000113737

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Description

expressed sequence BB123696 [Source:MGI Symbol;Acc:MGI:2145475]

Location

Chromosome 13: 52,883,647-52,951,845 reverse strand.

GRCm39:CM001006.3

About this gene

This gene has 12 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000306454.1	BB123696-203	701	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000222580.3	BB123696-201	2337	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000306457.1	BB123696-206	2233	No protein	-	lncRNA		-
ENSMUST00000306456.1	BB123696-205	1917	No protein	-	lncRNA		-
ENSMUST00000223209.2	BB123696-202	1756	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000306455.1	BB123696-204	1514	No protein	-	lncRNA		-
ENSMUST00000306459.1	BB123696-208	1512	No protein	-	lncRNA		-
ENSMUST00000306458.1	BB123696-207	1355	No protein	-	lncRNA		-
ENSMUST00000306462.1	BB123696-211	783	No protein	-	lncRNA		-
ENSMUST00000306463.1	BB123696-212	771	No protein	-	lncRNA		-
ENSMUST00000306460.1	BB123696-209	564	No protein	-	lncRNA		-
ENSMUST00000306461.1	BB123696-210	396	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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