Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
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ID History
- Gene history

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Gene: 1700020D12Rik ENSMUSG00000113628

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Description

RIKEN cDNA 1700020D12 gene [Source:MGI Symbol;Acc:MGI:1916687]

Location

Chromosome 12: 26,621,546-26,662,919 reverse strand.

GRCm39:CM001005.3

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000276517.1	1700020D12Rik-202	821	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000221140.3	1700020D12Rik-201	1019	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000276529.1	1700020D12Rik-214	973	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000276518.1	1700020D12Rik-203	935	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000276531.1	1700020D12Rik-216	813	No protein	-	lncRNA		-
ENSMUST00000276533.1	1700020D12Rik-218	776	No protein	-	lncRNA		-
ENSMUST00000276528.1	1700020D12Rik-213	749	No protein	-	lncRNA		-
ENSMUST00000276523.1	1700020D12Rik-208	712	No protein	-	lncRNA		-
ENSMUST00000276519.1	1700020D12Rik-204	692	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000276520.1	1700020D12Rik-205	647	No protein	-	lncRNA		-
ENSMUST00000276525.1	1700020D12Rik-210	613	No protein	-	lncRNA		-
ENSMUST00000276530.1	1700020D12Rik-215	552	No protein	-	lncRNA		-
ENSMUST00000276524.1	1700020D12Rik-209	528	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000276522.1	1700020D12Rik-207	425	No protein	-	lncRNA		-
ENSMUST00000276521.1	1700020D12Rik-206	380	No protein	-	lncRNA		-
ENSMUST00000276527.1	1700020D12Rik-212	314	No protein	-	lncRNA		-
ENSMUST00000276532.1	1700020D12Rik-217	305	No protein	-	lncRNA		-
ENSMUST00000276526.1	1700020D12Rik-211	269	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data