Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
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ID History
- Gene history

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Gene: Gm35548 ENSMUSG00000111697

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Description

predicted gene, 35548 [Source:MGI Symbol;Acc:MGI:5594707]

Location

Chromosome 9: 82,131,896-82,142,293 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 13 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000214348.3	Gm35548-201	548	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000318414.1	Gm35548-210	850	No protein	-	lncRNA		-
ENSMUST00000318406.1	Gm35548-202	732	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000318408.1	Gm35548-204	730	No protein	-	lncRNA		-
ENSMUST00000318409.1	Gm35548-205	727	No protein	-	lncRNA		-
ENSMUST00000318413.1	Gm35548-209	676	No protein	-	lncRNA		-
ENSMUST00000318415.1	Gm35548-211	641	No protein	-	lncRNA		-
ENSMUST00000318416.1	Gm35548-212	639	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000318407.1	Gm35548-203	584	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000318412.1	Gm35548-208	517	No protein	-	lncRNA		-
ENSMUST00000318417.1	Gm35548-213	501	No protein	-	lncRNA		-
ENSMUST00000318411.1	Gm35548-207	383	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000318410.1	Gm35548-206	340	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data