Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Gene: 4933404K13Rik ENSMUSG00000111342

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Description

RIKEN cDNA 4933404K13 gene [Source:MGI Symbol;Acc:MGI:1918268]

Location

Chromosome 10: 43,690,121-43,709,388 forward strand.

GRCm39:CM001003.3

About this gene

This gene has 14 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000286760.1	4933404K13Rik-204	744	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000286767.1	4933404K13Rik-211	1766	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000286770.1	4933404K13Rik-214	1334	No protein	-	lncRNA		-
ENSMUST00000217125.3	4933404K13Rik-203	1282	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000286769.1	4933404K13Rik-213	994	No protein	-	lncRNA		-
ENSMUST00000216740.3	4933404K13Rik-202	957	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000214651.3	4933404K13Rik-201	947	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000286762.1	4933404K13Rik-206	788	No protein	-	lncRNA		-
ENSMUST00000286764.1	4933404K13Rik-208	785	No protein	-	lncRNA		-
ENSMUST00000286765.1	4933404K13Rik-209	743	No protein	-	lncRNA		-
ENSMUST00000286761.1	4933404K13Rik-205	701	No protein	-	lncRNA		-
ENSMUST00000286766.1	4933404K13Rik-210	657	No protein	-	lncRNA		-
ENSMUST00000286763.1	4933404K13Rik-207	500	No protein	-	lncRNA		-
ENSMUST00000286768.1	4933404K13Rik-212	427	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data