Gene: BC028471 ENSMUSG00000107271

Description

cDNA sequence BC028471 [Source:MGI Symbol;Acc:MGI:3041249]

Location

Chromosome 5: 149,286,336-149,330,535 forward strand.

GRCm39:CM000998.3

About this gene

This gene has 68 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000340593.1	BC028471-207	1022	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000202022.4	BC028471-203	4113	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000341088.1	BC028471-257	1664	No protein	-	lncRNA	-
ENSMUST00000341064.1	BC028471-233	1441	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000341065.1	BC028471-234	1327	No protein	-	lncRNA	-
ENSMUST00000341062.1	BC028471-231	1284	No protein	-	lncRNA	-
ENSMUST00000341063.1	BC028471-232	1273	No protein	-	lncRNA	-
ENSMUST00000341072.1	BC028471-241	1268	No protein	-	lncRNA	-
ENSMUST00000341071.1	BC028471-240	1265	No protein	-	lncRNA	-
ENSMUST00000202654.4	BC028471-206	1240	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000340603.1	BC028471-217	1145	No protein	-	lncRNA	-
ENSMUST00000341078.1	BC028471-247	1080	No protein	-	lncRNA	-
ENSMUST00000341068.1	BC028471-237	1048	No protein	-	lncRNA	-
ENSMUST00000201444.3	BC028471-202	1043	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000202340.3	BC028471-204	1031	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000341061.1	BC028471-230	1024	No protein	-	lncRNA	-
ENSMUST00000341051.1	BC028471-221	992	No protein	-	lncRNA	-
ENSMUST00000341094.1	BC028471-263	984	No protein	-	lncRNA	-
ENSMUST00000341080.1	BC028471-249	981	No protein	-	lncRNA	-
ENSMUST00000200937.5	BC028471-201	971	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000341073.1	BC028471-242	962	No protein	-	lncRNA	-
ENSMUST00000341086.1	BC028471-255	956	No protein	-	lncRNA	-
ENSMUST00000341057.1	BC028471-226	943	No protein	-	lncRNA	-
ENSMUST00000341056.1	BC028471-225	917	No protein	-	lncRNA	-
ENSMUST00000341055.1	BC028471-224	902	No protein	-	lncRNA	-
ENSMUST00000341092.1	BC028471-261	898	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000341058.1	BC028471-227	890	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000341069.1	BC028471-238	875	No protein	-	lncRNA	-
ENSMUST00000341075.1	BC028471-244	865	No protein	-	lncRNA	-
ENSMUST00000341083.1	BC028471-252	810	No protein	-	lncRNA	-
ENSMUST00000341060.1	BC028471-229	804	No protein	-	lncRNA	-
ENSMUST00000341067.1	BC028471-236	794	No protein	-	lncRNA	-
ENSMUST00000340604.1	BC028471-218	794	No protein	-	lncRNA	-
ENSMUST00000341093.1	BC028471-262	787	No protein	-	lncRNA	-
ENSMUST00000340605.1	BC028471-219	781	No protein	-	lncRNA	-
ENSMUST00000341082.1	BC028471-251	752	No protein	-	lncRNA	-
ENSMUST00000341059.1	BC028471-228	724	No protein	-	lncRNA	-
ENSMUST00000340595.1	BC028471-209	724	No protein	-	lncRNA	-
ENSMUST00000341053.1	BC028471-223	707	No protein	-	lncRNA	-
ENSMUST00000341081.1	BC028471-250	707	No protein	-	lncRNA	-
ENSMUST00000341077.1	BC028471-246	678	No protein	-	lncRNA	-
ENSMUST00000341091.1	BC028471-260	673	No protein	-	lncRNA	-
ENSMUST00000341066.1	BC028471-235	667	No protein	-	lncRNA	-
ENSMUST00000340598.1	BC028471-212	654	No protein	-	lncRNA	-
ENSMUST00000341052.1	BC028471-222	647	No protein	-	lncRNA	-
ENSMUST00000340599.1	BC028471-213	640	No protein	-	lncRNA	-
ENSMUST00000341090.1	BC028471-259	629	No protein	-	lncRNA	-
ENSMUST00000341084.1	BC028471-253	608	No protein	-	lncRNA	-
ENSMUST00000340606.1	BC028471-220	595	No protein	-	lncRNA	-
ENSMUST00000341070.1	BC028471-239	579	No protein	-	lncRNA	-
ENSMUST00000341089.1	BC028471-258	574	No protein	-	lncRNA	-
ENSMUST00000340600.1	BC028471-214	554	No protein	-	lncRNA	-
ENSMUST00000341098.1	BC028471-267	552	No protein	-	lncRNA	-
ENSMUST00000341076.1	BC028471-245	530	No protein	-	lncRNA	-
ENSMUST00000341095.1	BC028471-264	514	No protein	-	lncRNA	-
ENSMUST00000340594.1	BC028471-208	507	No protein	-	lncRNA	-
ENSMUST00000202485.3	BC028471-205	497	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000341085.1	BC028471-254	464	No protein	-	lncRNA	-
ENSMUST00000340597.1	BC028471-211	463	No protein	-	lncRNA	-
ENSMUST00000340601.1	BC028471-215	445	No protein	-	lncRNA	-
ENSMUST00000341074.1	BC028471-243	423	No protein	-	lncRNA	-
ENSMUST00000341097.1	BC028471-266	403	No protein	-	lncRNA	-
ENSMUST00000340602.1	BC028471-216	382	No protein	-	lncRNA	-
ENSMUST00000340596.1	BC028471-210	379	No protein	-	lncRNA	-
ENSMUST00000341096.1	BC028471-265	334	No protein	-	lncRNA	-
ENSMUST00000341087.1	BC028471-256	323	No protein	-	lncRNA	-
ENSMUST00000341079.1	BC028471-248	312	No protein	-	lncRNA	-
ENSMUST00000341099.1	BC028471-268	263	No protein	-	lncRNA	-