Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
Regulation
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ID History
- Gene history

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Gene: 9430085M18Rik ENSMUSG00000106164

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Description

RIKEN cDNA 9430085M18 gene [Source:MGI Symbol;Acc:MGI:1924611]

Gene Synonyms

Gm43270

Location

Chromosome 5: 101,851,436-101,890,659 forward strand.

GRCm39:CM000998.3

About this gene

This gene has 12 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000254292.1	9430085M18Rik-203	654	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000198824.3	9430085M18Rik-201	1806	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000247330.1	9430085M18Rik-202	1793	No protein	-	lncRNA		-
ENSMUST00000254300.1	9430085M18Rik-211	911	No protein	-	lncRNA		-
ENSMUST00000254299.1	9430085M18Rik-210	807	No protein	-	lncRNA		-
ENSMUST00000254301.1	9430085M18Rik-212	730	No protein	-	lncRNA		-
ENSMUST00000254297.1	9430085M18Rik-208	720	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000254298.1	9430085M18Rik-209	712	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000254295.1	9430085M18Rik-206	710	No protein	-	lncRNA		-
ENSMUST00000254293.1	9430085M18Rik-204	637	No protein	-	lncRNA		-
ENSMUST00000254296.1	9430085M18Rik-207	613	No protein	-	lncRNA		-
ENSMUST00000254294.1	9430085M18Rik-205	568	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data