Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
- Gene history

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Gene: 4933402J10Rik ENSMUSG00000106013

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Description

RIKEN cDNA 4933402J10 gene [Source:MGI Symbol;Acc:MGI:1918307]

Location

Chromosome 5: 60,116,730-60,143,384 reverse strand.

GRCm39:CM000998.3

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000337183.1	4933402J10Rik-203	1768	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000198882.3	4933402J10Rik-202	1722	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000337185.1	4933402J10Rik-205	1682	No protein	-	lncRNA		-
ENSMUST00000337186.1	4933402J10Rik-206	1618	No protein	-	lncRNA		-
ENSMUST00000337189.1	4933402J10Rik-209	1539	No protein	-	lncRNA		-
ENSMUST00000337188.1	4933402J10Rik-208	1501	No protein	-	lncRNA		-
ENSMUST00000337190.1	4933402J10Rik-210	1454	No protein	-	lncRNA		-
ENSMUST00000337184.1	4933402J10Rik-204	1398	No protein	-	lncRNA		-
ENSMUST00000337192.1	4933402J10Rik-212	1145	No protein	-	lncRNA		-
ENSMUST00000337195.1	4933402J10Rik-215	1073	No protein	-	lncRNA		-
ENSMUST00000337194.1	4933402J10Rik-214	1027	No protein	-	lncRNA		-
ENSMUST00000337187.1	4933402J10Rik-207	1015	No protein	-	lncRNA		-
ENSMUST00000197579.6	4933402J10Rik-201	984	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000337191.1	4933402J10Rik-211	939	No protein	-	lncRNA		-
ENSMUST00000337196.1	4933402J10Rik-216	574	No protein	-	lncRNA		-
ENSMUST00000337193.1	4933402J10Rik-213	445	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data