SOX2 overlapping transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444112]
B230215L15Rik
Chromosome 3: 34,158,419-34,789,489 forward strand.
GRCm39:CM000996.3
This gene has 106 transcripts (splice variants).
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | Flags |
|---|---|---|---|---|---|---|---|
| ENSMUST00000198032.2 | Sox2ot-211 | 2695 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, | |
| ENSMUST00000196243.5 | Sox2ot-202 | 639 | No protein | - | lncRNA | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENSMUST00000199171.5 | Sox2ot-215 | 3486 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, | |
| ENSMUST00000250025.1 | Sox2ot-225 | 3252 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000198758.3 | Sox2ot-213 | 3134 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, | |
| ENSMUST00000247166.1 | Sox2ot-223 | 3118 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000246089.1 | Sox2ot-222 | 3071 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000200414.7 | Sox2ot-217 | 3016 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENSMUST00000197977.6 | Sox2ot-210 | 2972 | No protein | - | lncRNA | TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, | |
| ENSMUST00000197103.3 | Sox2ot-207 | 2905 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, | |
| ENSMUST00000270774.1 | Sox2ot-233 | 2890 | No protein | - | lncRNA | - | |
| ENSMUST00000270767.1 | Sox2ot-227 | 2874 | No protein | - | lncRNA | - | |
| ENSMUST00000240827.2 | Sox2ot-219 | 2812 | No protein | - | lncRNA | - | |
| ENSMUST00000270775.1 | Sox2ot-234 | 2810 | No protein | - | lncRNA | - | |
| ENSMUST00000270815.1 | Sox2ot-268 | 2805 | No protein | - | lncRNA | - | |
| ENSMUST00000270766.1 | Sox2ot-226 | 2776 | No protein | - | lncRNA | - | |
| ENSMUST00000196850.2 | Sox2ot-205 | 2705 | No protein | - | lncRNA | TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, | |
| ENSMUST00000270816.1 | Sox2ot-269 | 2661 | No protein | - | lncRNA | - | |
| ENSMUST00000270817.1 | Sox2ot-270 | 2646 | No protein | - | lncRNA | - | |
| ENSMUST00000197697.2 | Sox2ot-209 | 2533 | No protein | - | lncRNA | TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, | |
| ENSMUST00000270825.1 | Sox2ot-275 | 2484 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000270834.1 | Sox2ot-283 | 2442 | No protein | - | lncRNA | - | |
| ENSMUST00000270780.1 | Sox2ot-238 | 2020 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000270836.1 | Sox2ot-285 | 2012 | No protein | - | lncRNA | - | |
| ENSMUST00000270769.1 | Sox2ot-228 | 1889 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000270770.1 | Sox2ot-229 | 1773 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000270776.1 | Sox2ot-235 | 1625 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000270835.1 | Sox2ot-284 | 1585 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000270793.1 | Sox2ot-250 | 1559 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000270778.1 | Sox2ot-237 | 1397 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000270795.1 | Sox2ot-252 | 1391 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000270827.1 | Sox2ot-276 | 1377 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000270813.1 | Sox2ot-266 | 1192 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000250024.1 | Sox2ot-224 | 1189 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000244023.2 | Sox2ot-221 | 1166 | No protein | - | lncRNA | - | |
| ENSMUST00000196795.3 | Sox2ot-204 | 1165 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENSMUST00000270822.1 | Sox2ot-273 | 1163 | No protein | - | lncRNA | - | |
| ENSMUST00000270812.1 | Sox2ot-265 | 1158 | No protein | - | lncRNA | - | |
| ENSMUST00000270838.1 | Sox2ot-287 | 1153 | No protein | - | lncRNA | - | |
| ENSMUST00000197258.3 | Sox2ot-208 | 1129 | No protein | - | lncRNA | TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENSMUST00000270840.1 | Sox2ot-289 | 1105 | No protein | - | lncRNA | - | |
| ENSMUST00000270814.1 | Sox2ot-267 | 1103 | No protein | - | lncRNA | - | |
| ENSMUST00000270791.1 | Sox2ot-248 | 1076 | No protein | - | lncRNA | - | |
| ENSMUST00000270809.1 | Sox2ot-263 | 1055 | No protein | - | lncRNA | - | |
| ENSMUST00000271754.1 | Sox2ot-302 | 1053 | No protein | - | lncRNA | - | |
| ENSMUST00000200092.3 | Sox2ot-216 | 1026 | No protein | - | lncRNA | TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, | |
| ENSMUST00000270821.1 | Sox2ot-272 | 997 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000270777.1 | Sox2ot-236 | 975 | No protein | - | lncRNA | - | |
| ENSMUST00000270787.1 | Sox2ot-244 | 967 | No protein | - | lncRNA | - | |
| ENSMUST00000270845.1 | Sox2ot-294 | 919 | No protein | - | lncRNA | - | |
| ENSMUST00000270799.1 | Sox2ot-256 | 915 | No protein | - | lncRNA | - | |
| ENSMUST00000270823.1 | Sox2ot-274 | 893 | No protein | - | lncRNA | - | |
| ENSMUST00000270790.1 | Sox2ot-247 | 888 | No protein | - | lncRNA | - | |
| ENSMUST00000270801.1 | Sox2ot-257 | 878 | No protein | - | lncRNA | - | |
| ENSMUST00000270810.1 | Sox2ot-264 | 858 | No protein | - | lncRNA | - | |
| ENSMUST00000270792.1 | Sox2ot-249 | 817 | No protein | - | lncRNA | - | |
| ENSMUST00000270794.1 | Sox2ot-251 | 816 | No protein | - | lncRNA | - | |
| ENSMUST00000271756.1 | Sox2ot-304 | 807 | No protein | - | lncRNA | - | |
| ENSMUST00000270771.1 | Sox2ot-230 | 786 | No protein | - | lncRNA | - | |
| ENSMUST00000270783.1 | Sox2ot-241 | 785 | No protein | - | lncRNA | - | |
| ENSMUST00000242326.2 | Sox2ot-220 | 772 | No protein | - | lncRNA | - | |
| ENSMUST00000270785.1 | Sox2ot-243 | 763 | No protein | - | lncRNA | - | |
| ENSMUST00000270839.1 | Sox2ot-288 | 754 | No protein | - | lncRNA | - | |
| ENSMUST00000196058.5 | Sox2ot-201 | 753 | No protein | - | lncRNA | TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENSMUST00000270789.1 | Sox2ot-246 | 749 | No protein | - | lncRNA | - | |
| ENSMUST00000270797.1 | Sox2ot-254 | 740 | No protein | - | lncRNA | - | |
| ENSMUST00000196987.5 | Sox2ot-206 | 727 | No protein | - | lncRNA | TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENSMUST00000270805.1 | Sox2ot-260 | 725 | No protein | - | lncRNA | - | |
| ENSMUST00000270807.1 | Sox2ot-262 | 709 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000270841.1 | Sox2ot-290 | 706 | No protein | - | lncRNA | - | |
| ENSMUST00000200625.2 | Sox2ot-218 | 685 | No protein | - | lncRNA | TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENSMUST00000270781.1 | Sox2ot-239 | 674 | No protein | - | lncRNA | - | |
| ENSMUST00000270782.1 | Sox2ot-240 | 670 | No protein | - | lncRNA | - | |
| ENSMUST00000270784.1 | Sox2ot-242 | 580 | No protein | - | lncRNA | - | |
| ENSMUST00000198170.6 | Sox2ot-212 | 561 | No protein | - | lncRNA | TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENSMUST00000271755.1 | Sox2ot-303 | 546 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000270788.1 | Sox2ot-245 | 533 | No protein | - | lncRNA | - | |
| ENSMUST00000270833.1 | Sox2ot-282 | 533 | No protein | - | lncRNA | - | |
| ENSMUST00000270837.1 | Sox2ot-286 | 510 | No protein | - | lncRNA | - | |
| ENSMUST00000271752.1 | Sox2ot-300 | 510 | No protein | - | lncRNA | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000270804.1 | Sox2ot-259 | 492 | No protein | - | lncRNA | - | |
| ENSMUST00000270844.1 | Sox2ot-293 | 490 | No protein | - | lncRNA | - | |
| ENSMUST00000270806.1 | Sox2ot-261 | 477 | No protein | - | lncRNA | - | |
| ENSMUST00000270843.1 | Sox2ot-292 | 472 | No protein | - | lncRNA | - | |
| ENSMUST00000270772.1 | Sox2ot-231 | 470 | No protein | - | lncRNA | - | |
| ENSMUST00000270796.1 | Sox2ot-253 | 442 | No protein | - | lncRNA | - | |
| ENSMUST00000270842.1 | Sox2ot-291 | 405 | No protein | - | lncRNA | - | |
| ENSMUST00000198924.3 | Sox2ot-214 | 394 | No protein | - | lncRNA | TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENSMUST00000271753.1 | Sox2ot-301 | 391 | No protein | - | lncRNA | - | |
| ENSMUST00000270828.1 | Sox2ot-277 | 377 | No protein | - | lncRNA | - | |
| ENSMUST00000270832.1 | Sox2ot-281 | 377 | No protein | - | lncRNA | - | |
| ENSMUST00000270773.1 | Sox2ot-232 | 371 | No protein | - | lncRNA | - | |
| ENSMUST00000270820.1 | Sox2ot-271 | 371 | No protein | - | lncRNA | - | |
| ENSMUST00000271749.1 | Sox2ot-297 | 368 | No protein | - | lncRNA | - | |
| ENSMUST00000271757.1 | Sox2ot-305 | 367 | No protein | - | lncRNA | - | |
| ENSMUST00000270830.1 | Sox2ot-279 | 363 | No protein | - | lncRNA | - | |
| ENSMUST00000270802.1 | Sox2ot-258 | 358 | No protein | - | lncRNA | - | |
| ENSMUST00000270846.1 | Sox2ot-295 | 352 | No protein | - | lncRNA | - | |
| ENSMUST00000196793.5 | Sox2ot-203 | 348 | No protein | - | lncRNA | TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, | |
| ENSMUST00000270831.1 | Sox2ot-280 | 342 | No protein | - | lncRNA | - | |
| ENSMUST00000271750.1 | Sox2ot-298 | 342 | No protein | - | lncRNA | - | |
| ENSMUST00000270798.1 | Sox2ot-255 | 341 | No protein | - | lncRNA | - | |
| ENSMUST00000270829.1 | Sox2ot-278 | 325 | No protein | - | lncRNA | - | |
| ENSMUST00000270847.1 | Sox2ot-296 | 282 | No protein | - | lncRNA | - | |
| ENSMUST00000271751.1 | Sox2ot-299 | 235 | No protein | - | lncRNA | - | |
| ENSMUST00020183076.2 | Sox2ot-306 | 1148 | No protein | - | misc RNA | - |
