Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
- Genomic alignments
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- Orthologues
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Ontologies
- GO: Anatomical entity
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ID History
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Gene: 9330198I05Rik ENSMUSG00000104904

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Description

RIKEN cDNA 9330198I05 gene [Source:MGI Symbol;Acc:MGI:1924810]

Gene Synonyms

Gm43082

Location

Chromosome 5: 108,506,886-108,511,763 forward strand.

GRCm39:CM000998.3

About this gene

This gene has 9 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000311127.1	9330198I05Rik-202	989	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000311132.1	9330198I05Rik-207	1481	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000311133.1	9330198I05Rik-208	1442	No protein	-	lncRNA		-
ENSMUST00000311130.1	9330198I05Rik-205	1254	No protein	-	lncRNA		-
ENSMUST00000311129.1	9330198I05Rik-204	1242	No protein	-	lncRNA		-
ENSMUST00000311131.1	9330198I05Rik-206	1215	No protein	-	lncRNA		-
ENSMUST00000311134.1	9330198I05Rik-209	1210	No protein	-	lncRNA		-
ENSMUST00000311128.1	9330198I05Rik-203	1159	No protein	-	lncRNA		-
ENSMUST00000196846.2	9330198I05Rik-201	1095	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data