Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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Gene: 1700025H01Rik ENSMUSG00000101888

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Description

RIKEN cDNA 1700025H01 gene [Source:MGI Symbol;Acc:MGI:1922781]

Location

Chromosome 16: 30,010,152-30,019,724 forward strand.

GRCm39:CM001009.3

About this gene

This gene has 11 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000279597.1	1700025H01Rik-202	914	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000187479.3	1700025H01Rik-201	1413	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000279602.1	1700025H01Rik-207	1280	No protein	-	lncRNA		-
ENSMUST00000279603.1	1700025H01Rik-208	830	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000279604.1	1700025H01Rik-209	762	No protein	-	lncRNA		-
ENSMUST00000279598.1	1700025H01Rik-203	675	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000279605.1	1700025H01Rik-210	611	No protein	-	lncRNA		-
ENSMUST00000279601.1	1700025H01Rik-206	568	No protein	-	lncRNA		-
ENSMUST00000279600.1	1700025H01Rik-205	543	No protein	-	lncRNA		-
ENSMUST00000279599.1	1700025H01Rik-204	521	No protein	-	lncRNA		-
ENSMUST00000279606.1	1700025H01Rik-211	434	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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