Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
Regulation
External references
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ID History
- Gene history

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Gene: 1700028D13Rik ENSMUSG00000101683

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Description

RIKEN cDNA 1700028D13 gene [Source:MGI Symbol;Acc:MGI:1922819]

Location

Chromosome 5: 112,354,588-112,357,895 forward strand.

GRCm39:CM000998.3

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000186834.8	1700028D13Rik-201	626	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000317113.1	1700028D13Rik-204	893	No protein	-	lncRNA		-
ENSMUST00000317124.1	1700028D13Rik-215	825	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000187272.3	1700028D13Rik-202	774	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000317118.1	1700028D13Rik-209	722	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000317122.1	1700028D13Rik-213	717	No protein	-	lncRNA		-
ENSMUST00000317121.1	1700028D13Rik-212	713	No protein	-	lncRNA		-
ENSMUST00000317119.1	1700028D13Rik-210	712	No protein	-	lncRNA		-
ENSMUST00000317123.1	1700028D13Rik-214	662	No protein	-	lncRNA		-
ENSMUST00000317112.1	1700028D13Rik-203	608	No protein	-	lncRNA		-
ENSMUST00000317114.1	1700028D13Rik-205	601	No protein	-	lncRNA		-
ENSMUST00000317116.1	1700028D13Rik-207	570	No protein	-	lncRNA		-
ENSMUST00000317120.1	1700028D13Rik-211	557	No protein	-	lncRNA		-
ENSMUST00000317117.1	1700028D13Rik-208	555	No protein	-	lncRNA		-
ENSMUST00000317126.1	1700028D13Rik-217	544	No protein	-	lncRNA		-
ENSMUST00000317125.1	1700028D13Rik-216	451	No protein	-	lncRNA		-
ENSMUST00000317115.1	1700028D13Rik-206	401	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data