Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Gm28609 ENSMUSG00000101102

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Description

predicted gene 28609 [Source:MGI Symbol;Acc:MGI:5579315]

Location

Chromosome 1: 132,974,434-132,996,143 reverse strand.

GRCm39:CM000994.3

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000367820.1	Gm28609-207	1980	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000367822.1	Gm28609-209	2176	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000367824.1	Gm28609-211	2087	No protein	-	lncRNA		-
ENSMUST00000186515.4	Gm28609-201	2082	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000367821.1	Gm28609-208	2068	No protein	-	lncRNA		-
ENSMUST00000367823.1	Gm28609-210	1994	No protein	-	lncRNA		-
ENSMUST00000247728.1	Gm28609-206	1987	No protein	-	lncRNA		-
ENSMUST00000247695.1	Gm28609-205	1895	No protein	-	lncRNA		-
ENSMUST00000247648.1	Gm28609-203	1810	No protein	-	lncRNA		-
ENSMUST00000367826.1	Gm28609-213	1780	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000367827.1	Gm28609-214	1462	No protein	-	lncRNA		-
ENSMUST00000367829.1	Gm28609-216	916	No protein	-	lncRNA		-
ENSMUST00000367825.1	Gm28609-212	878	No protein	-	lncRNA		-
ENSMUST00000367828.1	Gm28609-215	453	No protein	-	lncRNA		-
ENSMUST00000247566.2	Gm28609-202	420	No protein	-	lncRNA		-
ENSMUST00000247660.2	Gm28609-204	415	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data