Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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Gene: 1700034K08Rik ENSMUSG00000100294

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Description

RIKEN cDNA 1700034K08 gene [Source:MGI Symbol;Acc:MGI:1925599]

Location

Chromosome 9: 92,861,961-92,887,820 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 13 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000188082.8	1700034K08Rik-202	655	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000326877.1	1700034K08Rik-207	830	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000326878.1	1700034K08Rik-208	795	No protein	-	lncRNA		-
ENSMUST00000326876.1	1700034K08Rik-206	794	No protein	-	lncRNA		-
ENSMUST00000190562.8	1700034K08Rik-204	686	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000326875.1	1700034K08Rik-205	650	No protein	-	lncRNA		-
ENSMUST00000185830.7	1700034K08Rik-201	536	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000326879.1	1700034K08Rik-209	526	No protein	-	lncRNA		-
ENSMUST00000326881.1	1700034K08Rik-211	439	No protein	-	lncRNA		-
ENSMUST00000326880.1	1700034K08Rik-210	411	No protein	-	lncRNA		-
ENSMUST00000326882.1	1700034K08Rik-212	399	No protein	-	lncRNA		-
ENSMUST00000188921.3	1700034K08Rik-203	316	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000326883.1	1700034K08Rik-213	273	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data