Gene: 1500004A13Rik ENSMUSG00000098912

Description

RIKEN cDNA 1500004A13 gene [Source:MGI Symbol;Acc:MGI:2442808]

Location

Chromosome 3: 88,690,250-88,742,502 reverse strand.

GRCm39:CM000996.3

About this gene

This gene has 50 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000184013.4	1500004A13Rik-204	2538	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000184014.8	1500004A13Rik-205	2135	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000183707.4	1500004A13Rik-202	6129	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000183966.9	1500004A13Rik-203	3789	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000185189.4	1500004A13Rik-209	3485	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000243151.2	1500004A13Rik-216	3361	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000252653.1	1500004A13Rik-236	2910	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000252652.1	1500004A13Rik-235	2667	No protein	-	lncRNA	-
ENSMUST00000242368.2	1500004A13Rik-213	2306	No protein	-	lncRNA	-
ENSMUST00000252661.1	1500004A13Rik-244	2267	No protein	-	lncRNA	-
ENSMUST00000252654.1	1500004A13Rik-237	2242	No protein	-	lncRNA	-
ENSMUST00000241077.2	1500004A13Rik-211	2125	No protein	-	lncRNA	-
ENSMUST00000244910.2	1500004A13Rik-218	2043	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000252636.1	1500004A13Rik-219	1916	No protein	-	lncRNA	-
ENSMUST00000241104.2	1500004A13Rik-212	1805	No protein	-	lncRNA	-
ENSMUST00000252665.1	1500004A13Rik-248	1695	No protein	-	lncRNA	-
ENSMUST00000184170.3	1500004A13Rik-206	1682	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000252637.1	1500004A13Rik-220	1656	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242968.2	1500004A13Rik-215	1647	No protein	-	lncRNA	-
ENSMUST00000252646.1	1500004A13Rik-229	1643	No protein	-	lncRNA	-
ENSMUST00000244899.1	1500004A13Rik-217	1642	No protein	-	lncRNA	-
ENSMUST00000252639.1	1500004A13Rik-222	1585	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000252642.1	1500004A13Rik-225	1576	No protein	-	lncRNA	-
ENSMUST00000252638.1	1500004A13Rik-221	1502	No protein	-	lncRNA	-
ENSMUST00000252641.1	1500004A13Rik-224	1356	No protein	-	lncRNA	-
ENSMUST00000242745.2	1500004A13Rik-214	1331	No protein	-	lncRNA	-
ENSMUST00000252658.1	1500004A13Rik-241	1276	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000241058.2	1500004A13Rik-210	1239	No protein	-	lncRNA	-
ENSMUST00000252640.1	1500004A13Rik-223	1222	No protein	-	lncRNA	-
ENSMUST00000252647.1	1500004A13Rik-230	1156	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000184640.4	1500004A13Rik-207	1043	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000252651.1	1500004A13Rik-234	1038	No protein	-	lncRNA	-
ENSMUST00000183374.10	1500004A13Rik-201	1003	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000252666.1	1500004A13Rik-249	970	No protein	-	lncRNA	-
ENSMUST00000184958.9	1500004A13Rik-208	965	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000252648.1	1500004A13Rik-231	937	No protein	-	lncRNA	-
ENSMUST00000252659.1	1500004A13Rik-242	937	No protein	-	lncRNA	-
ENSMUST00000252656.1	1500004A13Rik-239	907	No protein	-	lncRNA	-
ENSMUST00000252655.1	1500004A13Rik-238	888	No protein	-	lncRNA	-
ENSMUST00000252643.1	1500004A13Rik-226	860	No protein	-	lncRNA	-
ENSMUST00000252664.1	1500004A13Rik-247	842	No protein	-	lncRNA	-
ENSMUST00000252650.1	1500004A13Rik-233	783	No protein	-	lncRNA	-
ENSMUST00000252645.1	1500004A13Rik-228	771	No protein	-	lncRNA	-
ENSMUST00000252660.1	1500004A13Rik-243	745	No protein	-	lncRNA	-
ENSMUST00000252663.1	1500004A13Rik-246	686	No protein	-	lncRNA	-
ENSMUST00000252662.1	1500004A13Rik-245	629	No protein	-	lncRNA	-
ENSMUST00000252644.1	1500004A13Rik-227	620	No protein	-	lncRNA	-
ENSMUST00000252649.1	1500004A13Rik-232	598	No protein	-	lncRNA	-
ENSMUST00000252667.1	1500004A13Rik-250	514	No protein	-	lncRNA	-
ENSMUST00000252657.1	1500004A13Rik-240	355	No protein	-	lncRNA	-