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- Splice variants
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Gene: 5031434O11Rik ENSMUSG00000097885

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Description

RIKEN cDNA 5031434O11 gene [Source:MGI Symbol;Acc:MGI:1923230]

Gene Synonyms

Gm2370

Location

Chromosome 3: 51,467,135-51,474,546 forward strand.

GRCm39:CM000996.3

About this gene

This gene has 19 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000180616.4	5031434O11Rik-202	659	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000293978.1	5031434O11Rik-204	958	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000180404.8	5031434O11Rik-201	3731	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000293989.1	5031434O11Rik-215	1956	No protein	-	lncRNA		-
ENSMUST00000181303.8	5031434O11Rik-203	1853	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000293985.1	5031434O11Rik-211	1733	No protein	-	lncRNA		-
ENSMUST00000293987.1	5031434O11Rik-213	1631	No protein	-	lncRNA		-
ENSMUST00000293991.1	5031434O11Rik-217	929	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293982.1	5031434O11Rik-208	920	No protein	-	lncRNA		-
ENSMUST00000293984.1	5031434O11Rik-210	829	No protein	-	lncRNA		-
ENSMUST00000293988.1	5031434O11Rik-214	823	No protein	-	lncRNA		-
ENSMUST00000293986.1	5031434O11Rik-212	818	No protein	-	lncRNA		-
ENSMUST00000293990.1	5031434O11Rik-216	813	No protein	-	lncRNA		-
ENSMUST00000293983.1	5031434O11Rik-209	739	No protein	-	lncRNA		-
ENSMUST00000293979.1	5031434O11Rik-205	730	No protein	-	lncRNA		-
ENSMUST00000293981.1	5031434O11Rik-207	712	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293992.1	5031434O11Rik-218	696	No protein	-	lncRNA		-
ENSMUST00000293980.1	5031434O11Rik-206	632	No protein	-	lncRNA		-
ENSMUST00000293993.1	5031434O11Rik-219	629	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data