Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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ID History
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Gene: Gm16675 ENSMUSG00000097534

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Description

predicted gene, 16675 [Source:MGI Symbol;Acc:MGI:4439599]

Location

Chromosome 8: 47,121,843-47,192,689 reverse strand.

GRCm39:CM001001.3

About this gene

This gene has 15 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000208508.3	Gm16675-202	2586	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000181167.4	Gm16675-201	3895	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000243470.2	Gm16675-203	2630	No protein	-	lncRNA		-
ENSMUST00000252025.1	Gm16675-210	1990	No protein	-	lncRNA		-
ENSMUST00000252020.1	Gm16675-205	1863	No protein	-	lncRNA		-
ENSMUST00000252026.1	Gm16675-211	1228	No protein	-	lncRNA		-
ENSMUST00000252027.1	Gm16675-212	1190	No protein	-	lncRNA		-
ENSMUST00000252022.1	Gm16675-207	1145	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000252019.1	Gm16675-204	1014	No protein	-	lncRNA		-
ENSMUST00000252021.1	Gm16675-206	935	No protein	-	lncRNA		-
ENSMUST00000252023.1	Gm16675-208	926	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000252028.1	Gm16675-213	913	No protein	-	lncRNA		-
ENSMUST00000252024.1	Gm16675-209	847	No protein	-	lncRNA		-
ENSMUST00000252030.1	Gm16675-215	649	No protein	-	lncRNA		-
ENSMUST00000252029.1	Gm16675-214	383	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data