Gene: Lhx8 ENSMUSG00000096225

Description

LIM homeobox protein 8 [Source:MGI Symbol;Acc:MGI:1096343]

Gene Synonyms

L3, Lhx7

Location

Chromosome 3: 154,011,931-154,036,296 reverse strand.

GRCm39:CM000996.3

About this gene

This gene has 5 transcripts (splice variants), 265 orthologues, 21 paralogues and is associated with 30 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000205251.3	Lhx8-205	1729	346aa	ENSMUSP00000145485.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BJ54	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000177846.8	Lhx8-201	2076	367aa	ENSMUSP00000136047.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17926	O35652	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000204403.2	Lhx8-204	769	188aa	ENSMUSP00000145516.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0N4SWH1	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000204171.3	Lhx8-203	876	68aa	ENSMUSP00000144708.2	Nonsense mediated decay		A0A0N4SUJ5	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000203692.2	Lhx8-202	763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Lhx8 ENSMUSG00000096225

Strains

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Gene: Lhx8 ENSMUSG00000096225

Strains

About Us

Get help

Our sister sites

Follow us