Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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ID History
- Gene history

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Gene: 4930535L15Rik ENSMUSG00000093619

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Description

RIKEN cDNA 4930535L15 gene [Source:MGI Symbol;Acc:MGI:1925277]

Location

Chromosome 9: 107,868,883-107,879,694 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000300809.1	4930535L15Rik-203	701	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000175729.2	4930535L15Rik-201	1186	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000300818.1	4930535L15Rik-212	1127	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000175891.3	4930535L15Rik-202	970	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000300815.1	4930535L15Rik-209	813	No protein	-	lncRNA		-
ENSMUST00000300812.1	4930535L15Rik-206	700	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000300811.1	4930535L15Rik-205	694	No protein	-	lncRNA		-
ENSMUST00000300813.1	4930535L15Rik-207	678	No protein	-	lncRNA		-
ENSMUST00000300816.1	4930535L15Rik-210	618	No protein	-	lncRNA		-
ENSMUST00000300817.1	4930535L15Rik-211	589	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000300810.1	4930535L15Rik-204	504	No protein	-	lncRNA		-
ENSMUST00000300814.1	4930535L15Rik-208	467	No protein	-	lncRNA		-
ENSMUST00000300821.1	4930535L15Rik-215	429	No protein	-	lncRNA		-
ENSMUST00000300820.1	4930535L15Rik-214	423	No protein	-	lncRNA		-
ENSMUST00000300819.1	4930535L15Rik-213	335	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data