Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
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ID History
- Gene history

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Gene: Gm20515 ENSMUSG00000092242

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Description

predicted gene 20515 [Source:MGI Symbol;Acc:MGI:5141980]

Location

Chromosome 3: 34,465,670-34,489,303 reverse strand.

GRCm39:CM000996.3

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000272249.1	Gm20515-202	1395	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000174440.2	Gm20515-201	4824	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000272257.1	Gm20515-210	1972	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000272250.1	Gm20515-203	1390	No protein	-	lncRNA		-
ENSMUST00000272255.1	Gm20515-208	1160	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000272252.1	Gm20515-205	1126	No protein	-	lncRNA		-
ENSMUST00000272258.1	Gm20515-211	1107	No protein	-	lncRNA		-
ENSMUST00000272251.1	Gm20515-204	991	No protein	-	lncRNA		-
ENSMUST00000272256.1	Gm20515-209	957	No protein	-	lncRNA		-
ENSMUST00000272254.1	Gm20515-207	908	No protein	-	lncRNA		-
ENSMUST00000272253.1	Gm20515-206	884	No protein	-	lncRNA		-
ENSMUST00000272259.1	Gm20515-212	798	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000272265.1	Gm20515-218	733	No protein	-	lncRNA		-
ENSMUST00000272262.1	Gm20515-215	712	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000272260.1	Gm20515-213	608	No protein	-	lncRNA		-
ENSMUST00000272261.1	Gm20515-214	524	No protein	-	lncRNA		-
ENSMUST00000272264.1	Gm20515-217	495	No protein	-	lncRNA		-
ENSMUST00000272263.1	Gm20515-216	470	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data