Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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ID History
- Gene history

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Gene: 5730412P04Rik ENSMUSG00000087553

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Description

RIKEN cDNA 5730412P04 gene [Source:MGI Symbol;Acc:MGI:1917741]

Location

Chromosome X: 135,005,342-135,016,188 forward strand.

GRCm39:CM001013.3

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000341175.1	5730412P04Rik-202	1146	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000341178.1	5730412P04Rik-205	1332	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000341184.1	5730412P04Rik-211	1277	No protein	-	lncRNA		-
ENSMUST00000341176.1	5730412P04Rik-203	1192	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000147100.2	5730412P04Rik-201	1149	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000341179.1	5730412P04Rik-206	1033	No protein	-	lncRNA		-
ENSMUST00000341180.1	5730412P04Rik-207	958	No protein	-	lncRNA		-
ENSMUST00000341181.1	5730412P04Rik-208	932	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000341185.1	5730412P04Rik-212	925	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000341183.1	5730412P04Rik-210	840	No protein	-	lncRNA		-
ENSMUST00000341187.1	5730412P04Rik-214	834	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000341186.1	5730412P04Rik-213	829	No protein	-	lncRNA		-
ENSMUST00000341188.1	5730412P04Rik-215	666	No protein	-	lncRNA		-
ENSMUST00000341177.1	5730412P04Rik-204	602	No protein	-	lncRNA		-
ENSMUST00000341182.1	5730412P04Rik-209	498	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data