Summary
- Splice variants
- Transcript comparison
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Comparative Genomics
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Gene: Gm16008 ENSMUSG00000087381

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Description

predicted gene 16008 [Source:MGI Symbol;Acc:MGI:3802048]

Gene Synonyms

Gm10560

Location

Chromosome 4: 156,092,022-156,116,143 reverse strand.

GRCm39:CM000997.3

About this gene

This gene has 19 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000280360.1	Gm16008-204	379	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000280364.1	Gm16008-208	2851	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000280363.1	Gm16008-207	2425	No protein	-	lncRNA		-
ENSMUST00000280362.1	Gm16008-206	2349	No protein	-	lncRNA		-
ENSMUST00000151836.10	Gm16008-202	2349	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000280373.1	Gm16008-216	2309	No protein	-	lncRNA		-
ENSMUST00000126009.3	Gm16008-201	1926	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000280372.1	Gm16008-215	1690	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000280366.1	Gm16008-209	1583	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000280367.1	Gm16008-210	1305	No protein	-	lncRNA		-
ENSMUST00000280375.1	Gm16008-218	1214	No protein	-	lncRNA		-
ENSMUST00000181389.3	Gm16008-203	1055	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000280376.1	Gm16008-219	941	No protein	-	lncRNA		-
ENSMUST00000280369.1	Gm16008-212	871	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000280368.1	Gm16008-211	808	No protein	-	lncRNA		-
ENSMUST00000280371.1	Gm16008-214	766	No protein	-	lncRNA		-
ENSMUST00000280374.1	Gm16008-217	764	No protein	-	lncRNA		-
ENSMUST00000280370.1	Gm16008-213	690	No protein	-	lncRNA		-
ENSMUST00000280361.1	Gm16008-205	472	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data