Summary
- Splice variants
- Transcript comparison
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Comparative Genomics
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Ontologies
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Phenotypes
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Gene: Gm15892 ENSMUSG00000087373

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Description

predicted gene 15892 [Source:MGI Symbol;Acc:MGI:3801833]

Location

Chromosome 11: 87,949,892-87,958,305 forward strand.

GRCm39:CM001004.3

About this gene

This gene has 9 transcripts (splice variants) and 3 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000156149.8	Gm15892-203	1001	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000379749.1	Gm15892-207	1042	No protein	-	lncRNA		-
ENSMUST00000379751.1	Gm15892-209	808	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000379746.1	Gm15892-204	723	No protein	-	lncRNA		-
ENSMUST00000379747.1	Gm15892-205	578	No protein	-	lncRNA		-
ENSMUST00000152627.3	Gm15892-201	524	No protein	-	lncRNA		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000379750.1	Gm15892-208	509	No protein	-	lncRNA		-
ENSMUST00000379748.1	Gm15892-206	490	No protein	-	lncRNA		-
ENSMUST00000153213.2	Gm15892-202	478	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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