Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Pathway
Molecular interactions
Regulation
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ID History
- Gene history

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Gene: Gm16230 ENSMUSG00000087163

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Description

predicted gene 16230 [Source:MGI Symbol;Acc:MGI:3802022]

Location

Chromosome 10: 127,507,151-127,512,699 reverse strand.

GRCm39:CM001003.3

About this gene

This gene has 11 transcripts (splice variants) and 2 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000155550.3	Gm16230-201	934	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000263321.1	Gm16230-205	688	No protein	-	lncRNA		-
ENSMUST00000263323.1	Gm16230-207	607	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000263325.1	Gm16230-209	594	No protein	-	lncRNA		-
ENSMUST00000263320.1	Gm16230-204	577	No protein	-	lncRNA		-
ENSMUST00000263319.1	Gm16230-203	493	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000263318.1	Gm16230-202	441	No protein	-	lncRNA		-
ENSMUST00000263322.1	Gm16230-206	437	No protein	-	lncRNA		-
ENSMUST00000263327.1	Gm16230-211	397	No protein	-	lncRNA		-
ENSMUST00000263324.1	Gm16230-208	392	No protein	-	lncRNA		-
ENSMUST00000263326.1	Gm16230-210	384	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data