Summary
- Splice variants
- Transcript comparison
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Gene: 9130024F11Rik ENSMUSG00000087022

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Description

RIKEN cDNA 9130024F11 gene [Source:MGI Symbol;Acc:MGI:1926150]

Gene Synonyms

EG329160

Location

Chromosome 1: 57,010,065-57,089,243 forward strand.

GRCm39:CM000994.3

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000195462.2	9130024F11Rik-205	2862	No protein	-	TEC		TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000323299.1	9130024F11Rik-207	757	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000185204.2	9130024F11Rik-202	2628	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000323301.1	9130024F11Rik-209	2540	No protein	-	lncRNA		-
ENSMUST00000323300.1	9130024F11Rik-208	2345	No protein	-	lncRNA		-
ENSMUST00000323307.1	9130024F11Rik-215	1462	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000135238.6	9130024F11Rik-201	1307	No protein	-	lncRNA		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000323306.1	9130024F11Rik-214	1224	No protein	-	lncRNA		-
ENSMUST00000323302.1	9130024F11Rik-210	1193	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000323308.1	9130024F11Rik-216	1033	No protein	-	lncRNA		-
ENSMUST00000323303.1	9130024F11Rik-211	929	No protein	-	lncRNA		-
ENSMUST00000323305.1	9130024F11Rik-213	889	No protein	-	lncRNA		-
ENSMUST00000323304.1	9130024F11Rik-212	801	No protein	-	lncRNA		-
ENSMUST00000245366.2	9130024F11Rik-206	760	No protein	-	lncRNA		-
ENSMUST00000187927.2	9130024F11Rik-204	517	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000187858.2	9130024F11Rik-203	447	No protein	-	lncRNA		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data