Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Gene gain/loss tree
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Ontologies
- GO: Anatomical entity
Phenotypes
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Gene: Gm12915 ENSMUSG00000086589

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Description

predicted gene 12915 [Source:MGI Symbol;Acc:MGI:3650273]

Location

Chromosome 4: 124,628,476-124,645,984 reverse strand.

GRCm39:CM000997.3

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000322603.1	Gm12915-202	1390	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000131381.2	Gm12915-201	1499	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000322604.1	Gm12915-203	1275	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000322615.1	Gm12915-214	1253	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000322608.1	Gm12915-207	1200	No protein	-	lncRNA		-
ENSMUST00000322610.1	Gm12915-209	1198	No protein	-	lncRNA		-
ENSMUST00000322609.1	Gm12915-208	1172	No protein	-	lncRNA		-
ENSMUST00000322612.1	Gm12915-211	1167	No protein	-	lncRNA		-
ENSMUST00000322611.1	Gm12915-210	1095	No protein	-	lncRNA		-
ENSMUST00000322614.1	Gm12915-213	1092	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000322616.1	Gm12915-215	702	No protein	-	lncRNA		-
ENSMUST00000322613.1	Gm12915-212	697	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000322605.1	Gm12915-204	633	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000322606.1	Gm12915-205	548	No protein	-	lncRNA		-
ENSMUST00000322607.1	Gm12915-206	547	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data